Publications ENTROPIE Ifremer

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Articles

Callac Nolwenn, Boulo Viviane, Giraud Carolane, Beauvais Maxime, Ansquer Dominique, Ballan Valentine, Maillez Jean-Rene, Wabete Nelly, Pham Dominique Microbiota of the Rearing Water of Penaeus stylirostris Larvae Influenced by Lagoon Seawater and Specific Key Microbial Lineages of Larval Stage and Survival. Microbiology Spectrum IN PRESS. Publisher's official version : https://doi.org/10.1128/spectrum.04241-22 , Open Access version : https://archimer.ifremer.fr/doc/00807/91912/
Schweizer Magali, Jauffrais Thierry, Choquel Constance, Méléder Vona, Quinchard Sophie, Geslin Emmanuelle (2022). Trophic strategies of intertidal foraminifera explored with single-cell microbiome metabarcoding and morphological methods: What is on the menu? Ecology And Evolution, 12(11), e9437 (28p.). Open Access version : https://archimer.ifremer.fr/doc/00804/91624/
Nguyen Thi-My-Huong, Wantiez Laurent, Lemaire Pierrette, Chim Liet (2022). Feed Efficiency, Tissue Growth and Energy Budget Changes during the Molting Cycle of Juvenile Mud Crab, Scylla serrata: Effects of Dietary Proteins, Fishmeal versus Soy Protein Concentrate. Fishes, 7(6), 334 (19p.). Publisher's official version : https://doi.org/10.3390/fishes7060334 , Open Access version : https://archimer.ifremer.fr/doc/00804/91619/
Scherrer Romane, Quiniou Thomas, Jauffrais Thierry, Lemonnier Hugues, Bonnet Sophie, Selmaoui-Folcher Nazha (2022). Holographic reconstruction enhancement via unpaired image-to-image translation. Applied Optics, 61, 9807-9816. https://doi.org/10.1364/AO.471131
Denis Hugo, Selmoni Oliver, Gossuin Hugues, Jauffrais Thierry, Lecellier Gaël, Berteaux-Lecellier Véronique Screening for climate adaptative loci using seascape genomics resolves phenotypic variation in heat tolerance of the coral Acropora millepora. Under Review at Nature Portfolio IN PRESS. Publisher's official version : https://doi.org/10.21203/rs.3.rs-2173184/v1 , Open Access version : https://archimer.ifremer.fr/doc/00800/91230/
Romero Estela, Garnier Josette, Billen Gilles, Ramarson Antsiva, Riou Philippe, Le Gendre Romain (2022). Assessing the water quality of the Seine land-to-sea continuum for three agro-food system scenarios. Frontiers In Marine Science, 9, 1010887 (16p.). Publisher's official version : https://doi.org/10.3389/fmars.2022.1010887 , Open Access version : https://archimer.ifremer.fr/doc/00800/91228/
Lalau Noemie, Van Wynsberge Simon, Soulard Benoit, Petton Sébastien, Le Gendre Romain A quick and cost-effective method for modelling water renewal in shallow coral reef lagoons. Coral Reefs IN PRESS. https://doi.org/10.1007/s00338-022-02319-7
Conan Pascal, Philip Léna, Ortega-Retuerta Eva, Odobel Charlene, Duran Clélia, Pandin Caroline, Giraud Carolane, Meistertzheim Anne-Leila, Barbe Valérie, Ter Hall Alexandra, Pujo-Pay Mireille, Ghiglione Jean-François (2022). Evidence of coupled autotrophy and heterotrophy on plastic biofilms and its influence on surrounding seawater. Environmental Pollution, 315, 120463 (10p.). https://doi.org/10.1016/j.envpol.2022.120463
Andre Laure Vaitiare, Van Wynsberge Simon, Chinain Mireille, Andréfouët Serge (2022). Benefits of collaboration between indigenous fishery management and data-driven spatial planning approaches: the case of a Polynesian traditional design (rāhui). Fisheries Research, 256, 106475 (12p.). https://doi.org/10.1016/j.fishres.2022.106475
Bionaz Océane, Le Gendre Romain, Liao Vetea, Andréfouët Serge (2022). Natural stocks of Pinctada margaritifera pearl oysters in Tuamotu and Gambier lagoons: New assessments, temporal evolutions, and consequences for the French Polynesia pearl farming industry. Marine Pollution Bulletin, 183, 114055 (18p.). https://doi.org/10.1016/j.marpolbul.2022.114055
Lekieffre Charlotte, Jauffrais Thierry, Bernhard Joan M., Filipsson Helena L., Schmidt Christiane, Roberge Hélène, Maire Olivier, Panieri Giuliana, Geslin Emmanuelle, Meibom Anders (2022). Ammonium and Sulfate Assimilation Is Widespread in Benthic Foraminifera. Frontiers In Marine Science, 9, 861945 (10p.). Publisher's official version : https://doi.org/10.3389/fmars.2022.861945 , Open Access version : https://archimer.ifremer.fr/doc/00785/89736/
Bruyère Oriane, Soulard Benoit, Lemonnier Hugues, Laugier Thierry, Hubert Morgane, Petton Sébastien, Desclaux Terence, Van Wynsberge Simon, Le Tesson Eric, Lefèvre Jérôme, Dumas Franck, Kayara Jean-François, Bourassin Emmanuel, Lalau Noemie, Antypas Florence, Le Gendre Romain Hydrodynamic and hydrological processes within a variety of coral reef lagoons: Field observations during 6 cyclonic seasons in New Caledonia. Earth System Science Data IN PRESS. Publisher's official version : https://doi.org/10.5194/essd-2022-176 , Open Access version : https://archimer.ifremer.fr/doc/00777/88894/
Andréfouët Serge, Desclaux Terence, Buttin Julie, Jullien Swen, Aucan Jérôme, Le Gendre Romain, Liao Vetea (2022). Periodicity of wave-driven flows and lagoon water renewal for 74 Central Pacific Ocean atolls. Marine Pollution Bulletin, 179, 113748 (17p.). https://doi.org/10.1016/j.marpolbul.2022.113748
Giraud Carolane, Callac Nolwenn, Boulo Viviane, Lam Jean-Sebastien, Pham Dominique, Selmaoui-Folcher Nazha, Wabete Nelly (2022). The Active Microbiota of the Eggs and the Nauplii of the Pacific Blue Shrimp Litopenaeus stylirostris Partially Shaped by a Potential Vertical Transmission. Frontiers In Microbiology, 13, 886752 (13p.). Publisher's official version : https://doi.org/10.3389/fmicb.2022.886752 , Open Access version : https://archimer.ifremer.fr/doc/00770/88198/
Meliani Meriem F, Denis Françoise, Mohamed-Benkada Mustapha, Gabed Noujoud, Caruso Aurore, Callac Nolwenn, Abi-Ayad Sidi-Mohammed E.A. (2022). Characterization of Actinomycetes Strains Isolated from Cheliff Estuary in the North-West of Algeria. Jordan Journal of Biological Sciences, 15(01), 7-14. Publisher's official version : https://doi.org/10.54319/jjbs/150102 , Open Access version : https://archimer.ifremer.fr/doc/00762/87390/
Vaitiere André Laure, Van Wynsberge Simon, Chinain Mireille, Mahana Iti Gatti Clémence, Liao Vetea, Andrefouët Serge (2022). Spatial Solutions and Their Impacts When Reshuffling Coastal Management Priorities in Small Islands with Limited Diversification Opportunities. Sustainability, 14(7), 3871 (24p.). Publisher's official version : https://doi.org/10.3390/su14073871 , Open Access version : https://archimer.ifremer.fr/doc/00761/87281/
Colette Marie, Guentas Linda, Gunkel-Grillon Peggy, Callac Nolwenn, Della Patrona Luc (2022). Is halophyte species growing in the vicinity of the shrimp ponds a promising agri-aquaculture system for shrimp ponds remediation in New Caledonia? Marine Pollution Bulletin, 177, 113563 (13p.). https://doi.org/10.1016/j.marpolbul.2022.113563
Jauffrais Thierry, Brisset Maele, Lagourgue Laura, Payri Claude E., Gobin Siloë, Le Gendre Romain, Van Wynsberge Simon (2022). Seasonal changes in the photophysiology of Ulva batuffolosa in a coastal barrier reef. Aquatic Botany, 179, 103515 (9p.). https://doi.org/10.1016/j.aquabot.2022.103515
Wei Xi, Garnier Josette, Thieu Vincent, Passy Paul, Le Gendre Romain, Billen Gilles, Akopian Maia, Laruelle Goulven Gildas (2022). Nutrient transport and transformation in macrotidal estuaries of the French Atlantic coast: a modeling approach using the Carbon-Generic Estuarine Model. Biogeosciences, 19(3), 931-955. Publisher's official version : https://doi.org/10.5194/bg-19-931-2022 , Open Access version : https://archimer.ifremer.fr/doc/00754/86568/
Fallet Manon, Montagnani Caroline, Petton Bruno, Dantan Luc, de Lorgeril Julien, Comarmond Sébastien, Chaparro Cristian, Toulza Eve, Boitard Simon, Escoubas Jean Michel, Vergnes Agnes, Le Grand Jacqueline, Bulla Ingo, Gueguen Yannick, Vidal-Dupiol Jeremie, Grunau Christoph, Mitta Guillaume, Cossau Céline (2022). Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection. Microbiome, 10(1), 85 (21p.). Publisher's official version : https://doi.org/10.1186/s40168-022-01280-5 , Open Access version : https://archimer.ifremer.fr/doc/00753/86457/
André Laure Vaitiare, Chinain Mireille, Gatti Clémence M.I., Liao Vetea, Van Wynsberge Simon, Tedesco Pauline, Andréfouët Serge (2022). A systematic prioritization approach for identifying suitable pearl oyster restocking zones following a mass mortality event in Takaroa Atoll, French Polynesia. Marine Pollution Bulletin, 176, 113472 (10p.). https://doi.org/10.1016/j.marpolbul.2022.113472
Lagourgue L., Gobin S., Brisset Maele, Vandenberghe Sylvette, Bonneville C., Jauffrais Thierry, Van Wynsberge Simon, Payri C.E. (2022). Ten new species of Ulva (Ulvophyceae, Chlorophyta) discovered in New Caledonia: genetic and morphological diversity, and bloom potential. European Journal Of Phycology, 57(4), 458-478. https://doi.org/10.1080/09670262.2022.2027023
Pernet Fabrice (2022). Huîtres et algues : partenaires pour le meilleur et pour le pire dans un océan en mutation. The Conversation, 176322 (5p.). Open Access version : https://archimer.ifremer.fr/doc/00750/86214/
Hue Thomas, Chateau Olivier, Lecellier Gael, Marin Claire, Coulombier Noemie, Le Dean Loic, Gossuin Hugues, Adjeroud Mehdi, Dumas Pascal (2022). Impact of near-future ocean warming and acidification on the larval development of coral-eating starfish Acanthaster cf. solaris after parental exposure. Journal Of Experimental Marine Biology And Ecology, 548, 151685 (13p.). https://doi.org/10.1016/j.jembe.2021.151685
Jesus Bruno, Jauffrais Thierry, Trampe Erik C. L., Goessling Johannes W., Lekieffre Charlotte, Meibom Anders, Kühl Michael, Geslin Emmanuelle (2022). Kleptoplast distribution, photosynthetic efficiency and sequestration mechanisms in intertidal benthic foraminifera. Isme Journal, 16(3), 822-832. Publisher's official version : https://doi.org/10.1038/s41396-021-01128-0 , Open Access version : https://archimer.ifremer.fr/doc/00728/83992/

Communication avec actes

Scherrer Romane, Govan Rodrigue, Quiniou Thomas, Jauffrais Thierry, Lemonnier Hugues, Bonnet Sophie, Selmaoui-Folcher Nazha (2022). Real-Time Automatic Plankton Detection, Tracking and Classification on Raw Hologram. CIBB 2021: Computational Intelligence Methods for Bioinformatics and Biostatistics proceedings. Part of the Lecture Notes in Computer Science book series (LNBI,volume 13483). Springer, Cham. pp 25–39.

Thèse / HDR

Lemonnier Hugues (2022). Développement durable et aquaculture de la crevette. HDR. https://archimer.ifremer.fr/doc/00791/90258/

Rapports

Faure Chloe, Sabinot Catherine, Bouard Séverine, Brouillon Jonas, Guillemot Nicolas, Van Wynsberge Simon, Wickel Antoine (2022). Evaluer et caractériser la pêche non professionnelle rurale en Nouvelle-Calédonie. Livrable B : Protocoles d'enquêtes proposés pour la phase 2 et synthèse des enquêtes préparatoires des sites pilotes. Objectif n°A4.3 de la phase IV du plan d’action local IFRECOR Nouvelle-Calédonie 2016-2020.
Schaefer Anne-Lou, Quere Robin, Soulard Benoit, Duphil Maxime, Esposito Julien, Leveque Thierry, Le Gendre Romain (2022). Expertise hydro-bathymétrique en vue de l’extension de la zone d’élevage aquacole (ADECAL –Touho). Projet PRESENCE.
Lasne Grégory (coord.), Fernandez Jean-Michel, Laugier Thierry, Letourneur Yves, Payri Claude Elisabeth, Soulard Benoit, Tessier Emmanuel, Van Wynsberge Simon (2022). Guide pour le suivi de la qualité du milieu marin en Nouvelle-Calédonie Édition 2022. 289 p. Programme Guide du milieu marin 2. [Tome Nickel et Environnement]. https://doi.org/10.34928/dr77-sz84
Mouras Naina (2022). Characterization of dissolved organic matter in tropical estuarine sediment pore waters under ultramafic influence Key. Mémoire de Master 2 MARRES de l'Université Côte d'Azur. https://archimer.ifremer.fr/doc/00783/89495/
Bruyere Oriane, Le Gendre Romain, Bourassin Emmanuel, Soulard Benoit (2022). Rapport de mesures dans le lagon de Moindou, Province Sud de la Nouvelle-Calédonie. Projet PRESENCE – mission NEMO Étude du fonctionNEment hydrodynamique du lagon de MOindou. https://doi.org/10.13155/87118

Ouvrages / Actes de colloque

Tokotoko Jannaï, Govan Rodrigue, Lemonnier Hugues, Selmaoui-Folcher Nazha (2022). Multiscale and Multivariate Time Series Clustering: A New Approach. In Ceci, M., Flesca, S., Masciari, E., Manco, G., Raś, Z.W. (eds) Foundations of Intelligent Systems. ISMIS 2022. Lecture Notes in Computer Science(). Print ISBN978-3-031-16563-4 Online ISBN978-3-031-16564-1. vol 13515, pp.283-293 (Springer International Publishing).